Pastor-Cantizano N, Angelos ER., Ruberti C, Jiang T, Weng X, Regan BC, Haque T, Juenger TE, Brandizzi F. Programmed cell death regulator BAP2 is required for IRE1-mediated unfolded protein response in Arabidopsis. Nature Communication, 15:5804 (2024). DOI

Bhaskara GB*, Haque T*, Bonnette JE, Napier JD, Bauer D, Schmutz J, Juenger TE. Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants. Molecular Biology and Evolution, 40 (2023). DOI

Khasanova A, Joseph E, Bonnette J, Singer E, Haque T, Juenger TE Quantitative genetic-by- soil microbiome interactions in a perennial grass affect functional traits. Proceeding of the Royal Society B, 290:1991 (2023) DOI

Weng X, Song H, Sreedasyam A, Haque T, Zhang L, Chen C, Yoshinaga Y, Williams M, O’Malley RC, Grimwood J, Schmutz J, Juenger TE Transcriptome and DNA methylome dynamics reveal differential characteristics of inflorescence development between two ecotypes in Panicum hallii. Plant Physiology, kiad209 (2023) DOI

Haque T, Elias SM, Razzaque S*, Biswas S, Khan SF, Jewel GMNA, Rahman MS, Juenger TE, Seraj ZI Salt tolerance QTLs of an endemic rice landrace, Horkuch at seedling and reproductive stages. Sci Rep 12, 17306 (2022) DOI

Haque T, Bhaskara GB, Yin J, Bonnette J, Juenger TE Natural variation in growth and leaf ion homeostasis in response to salinity stress in Panicum hallii. Frontiers in Plant Science 13 (2022) DOI

Weng X, Haque T, Zhang L, Razzaque S, Lovell JT, Palacio-Mejía JD, Duberney P, Lloyd- Reilley J, Bonnette J, Juenger TE A pleiotropic flowering time QTL exhibits gene-by- environmental interaction for fitness in a perennial grass. Molecular Biology and Evolution. 39:10 (2022) DOI

Bhaskara GB, Lasky JR, Razzaque S, Zhang L, Haque T, Bonnette J, Civelek GZ, Verslues PE, Juenger TE Natural variation identifies new effectors of water use efficiency in Arabidopsis. Proceedings of the National Academy of Sciences 119:33 (2022), e2205305119 DOI

Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J*, Napier JD, Sreedasyam A, Session A, Shu S, Barry K, Auer C, Bonos S, Boston L, Chapman J, Daum C, Deshpande S, Ewing A, Grabowski P, Haque T, Harrison M, Healey A, Jiang J, Kudrna D, Lipzen A, Pendergast IV TH, Plott C, Qi P, Shakirov E, Sims D, Stewart A, Singan V, Tang Y, Thibivillier S, Webber J, Weng X, Williams M, Wu A, Yoshinaga Y, Zane M, Zhang L1, Zhang J, Boe AR, Fay PA, Fritschi FB, Lloyd-Reilley J, Mitchell RB, Rouquette Jr FM, Ronald P, Saha M, Tobias C, Udvardi M, Wing R, Wu Y, Bartley LE, Casler M, Devos KM, Lowry DB, Rokhsar D, Grimwood J, Juenger TE, Schmutz J Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature 590:7846 (2021) DOI

Palacio-Mejía JD, Grabowski PP, Ortiz EM, Silva-Arias GA, Haque T, Marais DLD, Bonnette J, Lowry DB, Juenger TE, Geographic patterns of genomic diversity and structure in the C4 grass Panicum hallii across its natural distribution. AoB PLANTS 13:2 (2021) [DOI]:(https://doi.org/10.1093/aobpla/plab002)

Razzaque S, Elias SM, Haque T*, Biswas S, Jewel GMNA, Rahman S, Weng X, Ismail AM, Walia H, Juenger TE, Seraj ZI (2019) Gene Expression analysis associated with salt stress in a reciprocally crossed rice population. Scientific Reports 9: 8249. DOI

Weng X, Lovell JT, Schwartz SL, Cheng C, Haque T, Zhang L, Razzaque S, Juenger TE (2019) Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C 4 grass. Plant, Cell & Environment 42: 2165-2182. DOI

Razzaque S, Haque T*, Elias SM, Rahman MS, Biswas S, Schwartz S, Ismail AM, Walia H, Juenger TE, Seraj ZI (2017) Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice. Scientific Reports 7: 46138 DOI

Islam MS, Saito JA, Emdad EM, Ahmed B, Islam MM, Halim A, Hossen QMM, Hossain MZ, Ahmed R, Hossain MS, Kabir SMT, Khan MSA, Khan MM, Hasan R, Aktar N, Honi U, Islam R, Rashid MM, Wan X, Hou S, Haque T, Azam MS, Moosa MM, Elias SM, Hasan AMM, Mahmood N, Shafiuddin M, Shahid S, Shommu NS, Jahan S, Roy S, Chowdhury A, Akhand AI, Nisho GM, Uddin KS, Rabeya T, Hoque SME, Snigdha AR, Mortoza S, Matin SA, Islam MK, Lashkar MZH, Zaman M, Yuryev A, Uddin MK, Rahman MS, Haque MS, Alam MM, Khan H, Alam M (2017) Comparative genomics of two jute species and insight into fibre biogenesis. Nature Plants 3: 16223 DOI

Amin USM, Biswas S, Elias SM, Razzaque S, Haque T, Malo R, Seraj ZI (2016) Enhanced Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice Vacuolar Na+/H+ Antiporter Gene Compared to 1.9 kb Coding Region with 5′ UTR in Transgenic Lines of Rice. Frontiers in Plant Science 7: 14 DOI

Parvin S, Biswas S, Razzaque S, Haque T, Elias SM, Tammi RS, Seraj ZI (2015) Salinity and drought tolerance conferred by in planta transformation of SNAC1 transcription factor into a high-yielding rice variety of Bangladesh. Acta Physiologiae Plantarum 37: 68 [DOI] (https://doi.org/10.1007/s11738-015-1817-8)

Biswas S, Razzaque S, Elias SM, Amin USM, Haque T, Islam SMT, Lisa LA, Naznin F, Rasul NM, Seraj ZI (2014) Effect of the vacuolar Na+/H+ antiporter transgene in a rice landrace and a commercial rice cultivar after its insertion by crossing. Acta Physiologiae Plantarum 37: 1730 DOI

Yesmin N, Elias SM, Rahman MS, Haque T, Mahbub Hasan AKM, Seraj ZI (2014) Unique Genotypic Differences Discovered among Indigenous Bangladeshi Rice Landraces. International Journal of Genomics 2014: 210328 DOI